Campo Grande, August 17, 2017
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Short Papers

All short papers (presented as posters - see list below) will be published in the
BSB/EBB2012 Digital Proceedings (available soon). 

 

  • Poster Number 1
    Genome sequence of a Brazilian Bacillus cereus isolate
    Joao Victor A. Oliveira (Department of Computer Science, University of Brasilia), Taina Raiol (Department of Cellular Biology, University of Brasilia), Narielly Calista Farias(College of Computing, Federal University of Mato Grosso do Sul), Nalvo F. Almeida (College of Computing, Federal University of Mato Grosso do Sul), Guilherme P. Telles (Institute of Computing, UNICAMP), Joao Carlos Setubal (Department of Biochemistry, University of Sao Paulo), Mikael L. Araujo (Department of Cellular Biology, University of Brasilia),Filipe P. Lima (Department of Computer Science, University of Brasilia), Clara Benoit-Pilven (Institut National des Sciences Appliques de Lyon, France), Marcelo M. Brigido (Department of Cellular Biology, University of Brasilia), Marlene T. Souza (Department of Cellular Biology, University of Brasilia), Lidia M. P. Moraes (Department of Cellular Biology, University of Brasilia) and Maria Emilia M. T. Walter (Department of Computer Science, University of Brasilia).

 

  • Poster Number 2
    Typing of a Brazilian Mycobacterium isolate by whole-genome sequencing
    Flábio R. Araújo (Embrapa Gado de Corte, Brasil), Ana B. C. Castelão (Embrapa Gado de Corte, Brasil), Antonio A. Fonseca-Jr. (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil),Mikael A. Hodon (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil), Marina A. Issa (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil), 
    Alberto Knust Ramalho (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil), Guilherme M.T. Mendes (Life Technologies, Brasil), Carlos A. N. Ramos (Embrapa Gado de Corte, Brasil), Erica B. Sales (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil), Paulo M. Soares-Filho (Laboratorio Nacional Agropecuario de Minas Gerais, Brasil), Narielly C. Farias (Faculdade de Computação, UFMS), Christiane Nishibe(Faculdade de Computação, UFMS) and Nalvo F. Almeida (Faculdade de Computação, UFMS).

 

  • Poster Number 3
    Exploring the diversity of Polyketide synthases (PKS) and Non-ribosomal peptide synthetases (NRPS) in aquatic environments
    Rafael R. C. Cuadrat (Computational and Systems Biology Laboratory, Oswaldo Cruz Institute, Rio de Janeiro, Brazil/Computational and Systems Biology Graduate Program – IOC – FIOCRUZ), Alberto M. R. Dávila (Computational and Systems Biology Laboratory, Oswaldo Cruz Institute, Rio de Janeiro, Brazil).

 

  • Poster Number 4
    Annotation and visualization of Pichia pastoris genomic data
    Caina F. B. Razzolini (Department of Computer Science, Institute of Exact Sciences, University of Brasilia), Taina Raiol (Department of Cellular Biology, Institute of Biology, University of Brasilia), Gabriela Q. Pereira (Department of Computer Science, Institute of Exact Sciences, University of Brasilia), Fernando A. G. Torres (Department of Cellular Biology, Institute of Biology, University of Brasilia), and Maria Emlia M. T. Walter (of Computer Science, Institute of Exact Sciences, University of Brasilia).

 

  • Poster Number 5
    Genome sequence of Mycobacterium massiliense strain GO 06 and comparative genomics analysis
    Guilherme Menegoi Ribeiro (Department of Cellular Biology, Institute of Biology, University of Brasilia), Taina Raiol (Department of Cellular Biology, Institute of Biology, University of Brasilia), Andrea Queiroz Maranhao (Department of Cellular Biology, Institute of Biology, University of Brasilia), Ildinete Silva Pereira (Department of Cellular Biology, Institute of Biology, University of Brasilia), Anamelia Lorenzetti Bocca (Department of Cellular Biology, Institute of Biology, University of Brasilia), Maria Emilia M. T. Walter (Department of Computer Science, University of Brasil), Ana Paula Junqueira-Kipnis (Department of Microbiology, Immunology, Parasitology, and Pathology, Federal University of Goias), Marcelo de Macedo Brigido (Department of Cellular Biology, Institute of Biology, University of Brasilia), and Andre Kipnis (Department of Microbiology, Immunology, Parasitology, and Pathology, Federal University of Goias).

 

  • Poster Number 6
    Family-Style Chinese Restaurant Process: Modeling Antigenic Evolution in Infuenza
    Gabriela B. Cybis (University of California, Los Angeles), Janet S. Sinsheimer (University of California, Los Angeles), and Marc A. Suchard (University of California, Los Angeles).

 

  • Poster Number 7
    HGT Analysis of Proteobacterial species using Phylogenomic Networks
    Luiz Thibério Lira Diniz Rangel (Department of BioChemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil), João Carlos Setubal (Department of BioChemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil), Wu Feng (Department of Computer Science, Virginia Tech, USA), Heshan Lin (Department of Computer Science, Virginia Tech, USA), and Nabeel Mohamed (Department of Computer Science, Virginia Tech, USA).

 

  • Poster Number 8
    A comparison of two approaches for species identication
    Heidi Muniz (Center of Biol. Sciences and Health, Fed. University of Mato Grosso do Sul, Brazil), Narielly C. Farias (College of Computing, Federal University of Mato Grosso do Sul, Brazil), Taina Raiol (Department of Cellular Biology, University of Braslia, Brazil), Andrea L. Cunha-Laura (Center of Biol. Sciences and Health, Fed. University of Mato Grosso do Sul, Brazil), Guilherme P. Telles (Institute of Computing, University of Campinas, Brazil)  and Nalvo F. Almeida (College of Computing, Federal University of Mato Grosso do Sul, Brazil).

 

  • Poster Number 9
    Inferring Robust Boolean Networks of the Early Embryonic Stage in Kidney Organogenesis
    Carlos H. A. Higa (Faculdade de Computação - Universidade Federal de Mato Grosso do Sul), Ronaldo F. Hashimoto (Instituto de Matemática e Estatística - Universidade de São Paulo), and Julio C. M. Montes (Escola Paulista de Medicina - Universidade Federal de São Paulo).

 

  • Poster Number 10
    Molecular docking to new drug design for the treatment of leishmaniasis
    Munira Ortale Zogaib (Laboratory of Molecular Modeling, Federal University of Mato Grosso do Sul, Campo Grande, Brazil), Bruno Martins Reboredo(Laboratory of Molecular Modeling, Federal University of Mato Grosso do Sul, Campo Grande, Brazil), Marcos Vinícius Rifon Garcia (Laboratory of Molecular Modeling, Federal University of Mato Grosso do Sul, Campo Grande, Brazil), and Marcos Serrou do Amaral (Laboratory of Molecular Modeling, Federal University of Mato Grosso do Sul, Campo Grande, Brazil).

 

  • Poster Number 11
    An Experimental Application of Random Forest on ADNI Genotype Dataset
    Gilderlanio Araujo (UFPE, Center of Informatics), Ivan Costa (UFPE, Center of Informatics), Manuela Souza (UFPE, Neuropsychiatric Department), Joao Oliveira (UFPE, Neuropsychiatric Department).

 

  • Poster Number 12
    VMDBV: A Web based system to the management of viral sequences data
    Jose Irahe Kasprzykowski (Laboratorio de Imunoparasitologia - LIP/CPQGM-FIOCRUZ and  Centro Universitario Jorge Amado – UNIJORGE),  Felipe Guimaraes Torres (Laboratorio de Imunoparasitologia - LIP/CPQGM-FIOCRUZ and  Centro Universitario Jorge Amado – UNIJORGE), Camila Indiani de Oliveira (Laboratorio de Imunoparasitologia - LIP/CPQGM-FIOCRU), Patricia Freitas Braga (Centro Universitario Jorge Amado – UNIJORGE and Programa de Modelagem Computacional - SENAI CIMATEC)  and Artur Trancoso Lopo de Queiroz (Laboratorio de Imunoparasitologia - LIP/CPQGM-FIOCRUZ).

 

  • Poster Number 13
    fbst-HWE Package: Full Bayesian Signficance Test for the Hardy-Weinberg Equilibrium
    Marcelo de Souza Lauretto (School of Arts, Sciences and Humanities of the University of Sao Paulo) and Jaime Albuquerque Maranhao (School of Arts, Sciences and Humanities of the University of Sao Paulo).

 

  • Poster Number 14
    A Similarity-based Genetic Algorithm for the Gene Prediction Problem
    Rodrigo Mitsuo Kishi (Universidade Federal de Mato Grosso do Sul, Campus de Três Lagoas),  Ronaldo Fiorilo dos Santos (Universidade Federal de Mato Grosso do Sul, Campus de Três Lagoas), Luciana Montera (Universidade Federal de Mato Grosso do Sul, Faculdade de Computação)  and Said Sadique Adi (Universidade Federal de Mato Grosso do Sul, Faculdade de Computação).

 

  • Poster Number 15
    A compressed suffix array based index with succinct longest common prefix information
    Daniel Saad Nogueira Nunes (Universidade de Brasília, Department of Computer ) and Mauricio Ayala-Rincón (Universidade de Brasília,  Department of Mathematics).

 

  • Poster Number 16
    Gene Prediction by Segment Alignment
    Leandro Ishi Soares de Lima  (Faculdade de Computacao, Universidade Federal de Mato Grosso do Sul) and Said Sadique Adi (Faculdade de Computacao, Universidade Federal de Mato Grosso do Sul).

 

  • Poster Number 17
    DCJ-substitution distance with distinct costs
    Marilia D. V. Braga (Inmetro - Instituto Nacional de Metrologia, Qualidade e Tecnologia, Brazil).

 

  • Poster Number 18
    An Empirical Study for Gap Penalty Score Using a Multiple Sequence Alignment Genetic Algorithm
    Sergio J. R. Ordine (Institute of Computing, University of Campinas), Andre Atanasio M. Almeida (Institute of Computing, University of Campinas), and Zanoni Dias (Institute of Computing, University of Campinas).

 

  • Poster Number 19
    PalinTool: A Tool for Genetic Palindrome Detection
    Adriano de Oliveira Caminha (Departamento de Física, Instituto de Ciências Exatas, Universidade Federal Fluminense),  Amit Bhaya (Programa de Engenharia Elétrica, Núcleo de Computação de Alto Desempenho (NACAD), Coordenação de Pesquisas em Pós-Graduação em Engenharia, Universidade Federal do Rio de Janeiro, COPPE-UFRJ) and Devaki Bhaya (Department of Plant Biology, Carnegie Institution for Science, Stanford, USA).

 

  • Poster Number 20
    On the Approximation Ratio for Sorting by Short Swaps
    Gustavo Rodrigues Galvão (University of Campinas, Institute of Computing, Brazil) and Zanoni Dias (University of Campinas, Institute of Computing, Brazil).

 

 

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